dohlee.gene module

dohlee.gene.get_first_item(items)[source]

Return the first item of items. If ‘items’ is a single value, just return it.

Parameters:items (list/value) – A list of items or a single value.
Returns:The first item of items.
dohlee.gene.ensg2symbol(ensembl_ids, species='Homo_sapiens')[source]

Convert Ensembl gene ids into gene symbols.

Parameters:ensembl_ids (list) – A list of Ensembl IDs to be converted.
Returns:A list of HGNC symbols, which is the result of best conversion of given Ensembl IDs.
dohlee.gene.symbol2ensg(symbols=None, species='Homo_sapiens')[source]

Convert gene symbols into Ensembl gene ids.

Parameters:symbols (list) – A list of HGNC symbols to be converted.
Returns:A list of Ensembl gene symbols(ENSG symbols).